Laboratory of Computing Biological Networks - reference

OSR in retina

cjj — Tue, 24 Jun 2014 01:03:12 +0000

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Omitted stimulus response (OSR) is one of evidences of rhythmic memory.
Paper on the phenomena:

Schwartz, Greg, Rob Harris, David Shrom, and Michael J Berry. “Detection and Prediction of Periodic Patterns by the Retina.” Nature Neuroscience 10, no. 5 (April 22, 2007): 552–54. doi:10.1038/nn1887.

Some model of LRC circuit:

Gao, Juan, Greg Schwartz, Michael J. Berry, and Philip Holmes. “An Oscillatory Circuit Underlying the Detection of Disruptions in Temporally-Periodic Patterns.” Network: Computation in Neural Systems 20, no. 2 (January 1, 2009): 106–35. doi:10.1080/09548980902991705.

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Transfer entropy

cjj — Mon, 16 Jun 2014 01:54:52 +0000

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Neurosciences

Schreiber, Thomas. “Measuring Information Transfer.” Physical Review Letters 85, no. 2 (July 10, 2000): 461–64.
doi:10.1103/PhysRevLett.85.461.

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TUM model for synaptic transmission

cjj — Tue, 03 Jun 2014 12:59:06 +0000

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Neurosciences

Tsodyks, Misha, Asher Uziel, and Henry Markram. “Synchrony Generation in Recurrent Networks with Frequency-Dependent Synapses.” Journal of Neuroscience 20, no. 1 (January 1, 2000): RC50.
http://www.jneurosci.org/cgi/content/abstract/20/1/RC50

This is the original paper describing the 3-state cycle of neural transmitter for synaptic transmission. An extension to include a forth, super inactive state, is given in the paper:

Volman, Vladislav, Richard C. Gerkin, Pak-Ming Lau, Eshel Ben-Jacob, and Guo-Qiang Bi. “Calcium and Synaptic Dynamics Underlying Reverberatory Activity in Neuronal Networks.” Physical Biology 4, no. 2 (2007): 91–103.
http://www.iop.org/EJ/abstract/1478-3975/4/2/003/

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