https://networks.tir.tw/wiki/ 2026-05-19T05:42:07+00:00 https://networks.tir.tw/wiki/ https://networks.tir.tw/wiki/_media/logo.png text/html 2019-09-04T14:44:32+00:00 Anonymous (anonymous@undisclosed.example.com) https://networks.tir.tw/wiki/brain?rev=1567608272&do=diff 腦科學計畫 * 活體鈣離子分析 * Miniscope * Elevated plus maze text/html 2022-04-09T07:14:05+00:00 Anonymous (anonymous@undisclosed.example.com) https://networks.tir.tw/wiki/software?rev=1649488445&do=diff Software of Interest * CaImAn for Calcium Image Processing * Paper (zotero:) * Documentation * Deeplabcut text/html 2023-04-06T07:22:41+00:00 Anonymous (anonymous@undisclosed.example.com) https://networks.tir.tw/wiki/start?rev=1680765761&do=diff LCBN wiki a wiki space for Laboratory of Computing Biological Networks biophysics, neurosciences, and complex systems Projects * dynstat: statistical modeling for dynamics of biological systems * xbrain: image analysis of X-ray tomography of brains * inplst: interneuron plasticity<script type="text/javascript"> catlist_baseurl = "https://networks.tir.tw/wiki/"; catlist_basescript = "doku.php"; catlist_useslash = 0; catlist_userewrite = 1; catlist_sepchar = "_"; catlist_deaccent = 1; c… text/html 2021-09-09T13:02:04+00:00 Anonymous (anonymous@undisclosed.example.com) https://networks.tir.tw/wiki/tools?rev=1631192524&do=diff List of tools Software * Presentation: reveal.js, jupyter notebook slides * News: wordpress * Documentation: dokuwiki * Source: gitlab * Files: nextcloud * Rescue: ventoy allows multiple boot images on one drive gitlab * Deployed at git.tir.tw using docker. * A bit troublesome to upgrade. Need to follow some kind of upgrade path. text/html 2020-04-23T06:24:47+00:00 Anonymous (anonymous@undisclosed.example.com) https://networks.tir.tw/wiki/xbrain?rev=1587623087&do=diff Image analysis of X-ray tomography of brains * Compare branch-length distribution of xBrain tracing results with the phantom brain from fly circuit * Processing of datasets * Tomographic reconstruction of mouse brain using Octopus and TomoPy * Clustering of different brains: 3 groups? Is this due to experimental conditions, tracing condition, threshold?